acidplots 0.2.0 (2019-04-22)

Reworked package, consolidating previous minimalism and firestarter packages.

New functions

  • synesthesia color palette functions.
  • acid_coord_flip: Intelligently puts samples at the top of the Y axis when flipped. Particularly useful for barplots.
  • acid_pretty_breaks: Attempt to improve scales::pretty_breaks, using an approach more similar to the base plot engine.
  • Renamed ggplot2 themes: acid_theme_light, acid_theme_dark.

Major changes

  • All ggplot2 geoms and transformations (ggproto functions) now consistently use acid_ as a prefix.

Minor changes

  • plotCountsPerBiotype and plotCountsPerBroadClass now support title.

Deprecations

  • plotCountsPerGene has been renamed to plotCountsPerFeature.
  • plotGenesDetected has been renamed to plotFeaturesDetected.
  • Deprecated theme_paperwhite and theme_midnight in favor of acid_theme_light and acid_theme_dark.

acidplots 0.2.1 (2019-04-25)

New functions

  • New gradient palette functions: purpleOrange, blueYellow.
  • Remove gplots package from imports.

Major changes

  • plotHeatmap now supports automatic color calculation when breaks argument is defined. Also improved support for legendBreaks.

Minor changes

  • Fix .pheatmapColorPalette internal check for color, which requires n argument, rather than assuming positional variable.
  • plotCountsPerFeature: Improve the count subtitle.
  • S4 generic reexport documentation fixes.
  • Miscellaneous documentation fixes.

acidplots 0.2.2 (2019-04-26)

Major changes

  • Now importing upset function from UpSetR, with modified formals, so we can easily call this from other packages, including DESeqAnalysis.

acidplots 0.2.3 (2019-05-05)

Major changes

  • Now pinned against R >= 3.5.