All functions

acid_coord_flip()

Flip coordinates

acid_pretty_breaks()

Pretty breaks that resemble the base plotting engine

acid_scale_y_continuous_nopad()

Remove Y axis padding

genderMarkers

Sexually dimorphic gender marker genes

acid_geom_abline() acid_geom_bar() acid_geom_label() acid_geom_label_average() acid_geom_label_repel()

ggplot2 geometric objects

gradient() purpleOrange() blueYellow()

Hex color gradient generator

plotCorrelationHeatmap()

Correlation heatmap

plotCounts()

Plot counts

plotCountsPerBiotype()

Plot counts per biotype

plotCountsPerBroadClass()

Plot counts per broad class definition

plotCountsPerFeature()

Plot counts per feature

plotFeaturesDetected plotFeaturesDetected(<SummarizedExperiment>) plotFeaturesDetected(<SingleCellExperiment>)

Plot features detected

plotGenderMarkers()

Plot sexually dimorphic gender marker genes

plotHeatmap()

Heatmap

plotPCA()

Principal component analysis plot

plotQC()

Quality control

plotQuantileHeatmap()

Quantile heatmap

plotTotalCounts()

Plot total read counts

plotZerosVsDepth()

Plot percentage of zeros vs. library depth

synesthesia() synesthesia_pal() scale_colour_synesthesia_c() scale_color_synesthesia_c() scale_colour_synesthesia_d() scale_color_synesthesia_d() scale_fill_synesthesia_c() scale_fill_synesthesia_d()

Synesthesia color palette

acid_theme_light() acid_theme_dark()

ggplot2 themes

upset()

UpSetR plot, with improved default aesthetics